Changelog
0.5.2 (2025-11-03)
Bug Fixes
- add handling of gff attributes with length of 1 (8dde6d6)
- fixed attribute parsing error (3e3d3c6)
- fixed column name (b3b33a8)
- header obj was written instead of text (5bb2dae)
- re-wrote the gff output function (aa56f31)
- some gff lines dont have attributes (05328c5)
- upgrade pysam everywhere (edcbb96)
Dependencies
- pin dependency versions (eda4948)
- update aminoextract to version 0.4.1 (369d152)
Documentation
- minor changes to documentation (ef1fc9e)
0.5.1 (2022-11-24)
Bug Fixes
- change the seq_id in the output gff to match the input samplename (37b7d9e)
0.5.0 (2022-04-22)
⚠ BREAKING CHANGES
- Use output files in stead of folders
Features
- Use output files in stead of folders (b0dfef8)
Documentation
- Update docs for file output in stead of folders (7c47393)
0.4.0 (2022-04-14)
⚠ BREAKING CHANGES
- Use only a single minimum coverage level
Features
- Use only a single minimum coverage level (cdd29b7)
Bug Fixes
- Fix WriteOutputs number of args (8bf72f8)
- Use pysam directly in stead of pysamstats (afd8c0a)
Dependencies
- remove parmap as a dependency (0aaed4d)
Documentation
- add docstring to
TrueConsense.Outputs (4855ee9)
- add docstrings to functions in
TrueConsense.Ambig (4e8a138)
- add docstrings to functions in
TrueConsense.Coverage (47d8c89)
- add docstrings to functions in
TrueConsense.Events (6d754e3)
- add docstrings to functions in
TrueConsense.indexing (650a5d1)
- add docstrings to functions in
TrueConsense.Sequences (5abdb81)
- add docstrings to functions of
TrueConsense.ORFs (b52a750)
- update readme and docs-index to support a single coverage level (f9fd73e)
- update TrueConsense docs to only feature a single coverage level (53cecc3)
0.3.0 (2021-11-25)
Features
- add arg to override index with pre-made index on certain positions (9b3227c)
Documentation
- add changelog page (2f29130)
- add explanation of
--index-override flag to docs (ac4ac4b)