Changelog
0.4.3 (2022-02-03)
Bug Fixes
- remove unnecessary print statement (c7bd712)
Documentation
- add
--error-rate flag to user guide documentation (9db3848)
0.4.2 (2022-02-03)
Features
- allow the primer-search error rate to be set by the user (fddd94a)
0.4.1 (2022-02-02)
Bug Fixes
- don't report duplicate coordinates of same primer when ambiguity-primers are given (f5449e2)
- use Nonetypes instead of string "None" (f5449e2)
0.4.0 (2022-01-27)
Features
- find coordinates of primers with mismatches to reference (d6bf925)
Bug Fixes
- consistently remove reverse primers in end-to-end mode (0c4f621)
- Fix cutting too many bases (78bd9ea)
- Make number of iterations variable (62ac2d7)
Documentation
- update installation instructions and include primer-search changes (5fdc6fa)
0.3.3 (2021-12-08)
Bug Fixes
- solve preset-sampling crash when less than 3 input reads are provided (29d5624)
- solve reference before assignment error in end-to-mid mode (14c9d24)
0.3.2 (2021-11-26)
Bug Fixes
- report removed coordinates from all iterations (f726e9a)
0.3.1 (2021-11-25)
Bug Fixes
- Distinguish (mis)match and cut soft clips (d4132c1)
- Add minimap scoring to presets (11158e5)
0.3.0 (2021-11-17)
Features
- Use CIGAR strings to cut end-to-end (ebd2684)
Bug Fixes
- Fix typo in 75e792fa8d69746 (eca004b)
- only return data that got an alignment-hit (f9e64e8)
- Improved (fastq)data loading speed (9d1ae23)
Documentation
- Fix comment in cut_read function (b920738)
- update docs to match new primer removal process (035be92)
- update readme (95ff984)
0.2.3 (2021-10-28)
Bug Fixes
- set correct exit code when
-to flag is given (5a93ff0)
0.2.2 (2021-10-27)
Bug Fixes
- add missing primer-orientation keywords (41a84e6)
- exit cleanly when primers aren't found (#11) (e927591)
- Exit cleanly with empty input (#12) (35aae65)
Documentation
- update user-guide to include newly added flag (4d28ac1)
0.2.1 (2021-10-25)
Documentation
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